ABOUT THIS RECORDspecies: Vitis vinifera
source: PMRD, original name: vvi-miR845c
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCTCTGATACCAATTGATG miRNA* TTTTGGTTGTCTGAGTTTCA mismatches: 1 bulges: 3 |
pre-miRNA
CAATTATGTGTTTTGGTTGTCTGAGTTTCATGTTGGCAATTTCTTAATGATTAAACATGAGGCTCTGATACCAATTGATGCATAAACCAT
dot-bracket secondary structure
...((((((((((((((.(((.((((((((((((...((((.......)))).)))))))))))).))))))))..))))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
CAATTATGTGTTTTGGTTGTCTGAGTTTCATGTTGGCAATTTCTTAATGATTAAACATGAGGCTCTGATACCAATTGATGCATAAACCAT
dot-bracket secondary structure
...((((((((((((((.(((.((((((((((((...((((.......)))).)))))))))))).))))))))..))))))))).....
SIMILARITIES| miRBase vvi-MIR845c: 4e-46 PMRD ath-miR845a: 0.00007 microPC no hits | UniProt no hits RFAM no hits |
Identical with: vvi-MIR845c from miRBase (MNEST041695) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
